Filebeat supports templates for inputs and modules.

["source","yaml",subs="attributes"]
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filebeat.autodiscover:
  providers:
    - type: kubernetes
      templates:
        - condition:
            equals:
              kubernetes.namespace: kube-system
          config:
            - type: docker
              containers.ids:
                - "${data.kubernetes.container.id}"
              exclude_lines: ["^\\s+[\\-`('.|_]"]  # drop asciiart lines
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This configuration launches a `docker` logs input for all containers of pods running in the Kubernetes namespace
`kube-system`.

If you are using modules, you can override the default input and use the docker input instead.

["source","yaml",subs="attributes"]
-------------------------------------------------------------------------------------
filebeat.autodiscover:
  providers:
    - type: kubernetes
      templates:
        - condition:
            equals:
              kubernetes.container.image: "redis"
          config:
            - module: redis
              log:
                input:
                  type: docker
                  containers.ids:
                    - "${data.kubernetes.container.id}"
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